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If you mean you've put them into a folder (?) - then, no, I'm afraid you are "stuck" with how Apple makes folders appear. Unless you jail break, then you can make folders appear how you wish.
I'm sorry, but the only thing this app does (or any of the others) is change the appearance of one bookmark. You can't make a collection of them appear as anything other than the black box on a stock iPad. Sorry.
Marilyn