I recently jailbroke my iPad 3 and I'll be updating to iOS 6 once it gets released. I am aware that updating the software removes the jailbreak. I want to know what will happen to my jailbroken cydia apps. Will they get erased? How can I back them up with iTunes so that I can restore them after the update (when a Jailbreak for iOS 6 gets released). I read a lot of tutorials on how to sync these kind of apps and a lot of the tutorials say that I should Reset Warnings on iTunes followed by Transfer Purchases but I keep getting that I'm not authorized for the app, but when I click Authorize this computer in iTunes and enter my Apple Store ID, I find that my computer is authorized to my account. iTunes then starts syncing only apps downloaded from the App Store) but Cydia apps don't. The reason I want to sync all my Cydia apps is because as I mentioned earlier I want to update to iOS 6 but I don't want to redownload the apps manually, it will take a lot of time. So if someone can help me I'll be greatly appreciated.