An update, my problem has gone away. It seems that there was a problem with a program that was for the iPod/iPhone and clearly seemed to be incompatible with the iPad. I removed a bunch of programs, only the ones that iTunes said are iPod/iPhone only and the problem went away.
So, now for a general comment to this thread, I am running a 64G 3G that came with 3.2.1 and aside from the problem above, which is understandable, it's been running great, Jailbroken for a month. A month ago I went to jailbreakme.com and first try it was jailbroken. Clearly I was lucking as it seems that many are having problems with it. I'm keeping my fingers crossed that it continues to run well. It's hard for me not to recommend trying it based on my experience, however, if I do run in to the boot cycling then I will go back to non-jailbroken until the next release.